STRINGSTRING
POPTR_0001s20680.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s20680.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s20680.1Predicted protein (131 aa)    
Predicted Functional Partners:
POPTR_0010s19230.1
Predicted protein (384 aa)
     
  0.887
POPTR_0008s07250.1
Predicted protein (343 aa)
     
  0.887
POPTR_0013s10990.1
Predicted protein (426 aa)
   
   
  0.867
POPTR_0013s09940.1
Predicted protein (372 aa)
   
   
  0.867
POPTR_0019s08530.1
Hypothetical protein (261 aa)
   
 
  0.850
POPTR_0019s08520.1
Uncharacterized protein (170 aa)
   
 
  0.850
POPTR_0004s23110.1
Predicted protein (408 aa)
   
 
  0.850
POPTR_0019s04100.1
Predicted protein (684 aa)
     
 
  0.803
POPTR_0019s04090.1
Predicted protein (1812 aa)
     
 
  0.803
POPTR_0018s09780.1
Predicted protein (593 aa)
     
 
  0.755
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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