STRINGSTRING
POPTR_0001s20890.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s20890.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s20890.1Predicted protein (318 aa)    
Predicted Functional Partners:
POPTR_0013s01820.1
Predicted protein (452 aa)
     
  0.990
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.959
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
 
  0.959
POPTR_0004s18540.1
Predicted protein (2740 aa)
     
  0.878
POPTR_0005s20500.1
BRCT domain-containing family protein (962 aa)
       
  0.842
POPTR_0014s11750.1
BRCT domain-containing family protein (1247 aa)
       
  0.838
POPTR_0002s19850.1
Predicted protein (1221 aa)
       
  0.838
POPTR_0005s11310.1
Predicted protein (613 aa)
     
  0.814
POPTR_0001s41800.1
Predicted protein (747 aa)
     
  0.790
POPTR_0015s08800.1
Uncharacterized protein (404 aa)
       
  0.787
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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