STRINGSTRING
POPTR_0001s21220.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21220.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21220.1Hypothetical protein (511 aa)    
Predicted Functional Partners:
POPTR_0019s11850.1
Urishiol oxidase ; Lignin degradation and detoxification of lignin-derived products (567 aa)
     
        0.470
POPTR_0017s12860.1
Predicted protein (318 aa)
     
        0.470
POPTR_0011s07800.1
Glutamate-gated kainate-type ion channel receptor subunit GluR5 (867 aa)
     
        0.470
POPTR_0009s14250.1
Predicted protein (225 aa)
     
        0.470
POPTR_0009s14240.1
Predicted protein (225 aa)
     
        0.470
POPTR_0006s15020.1
Predicted protein (536 aa)
     
        0.470
POPTR_0003s19610.1
Predicted protein (355 aa)
     
        0.462
POPTR_0017s06760.1
Predicted protein (245 aa)
     
        0.455
POPTR_0017s06770.1
Annotation not available (183 aa)
     
        0.454
POPTR_1294s00200.1
Predicted protein (139 aa)
     
        0.453
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]