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POPTR_0001s21380.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21380.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21380.1Predicted protein; Lignin degradation and detoxification of lignin-derived products (563 aa)    
Predicted Functional Partners:
POPTR_0018s14140.1
Predicted protein (158 aa)
   
 
  0.720
POPTR_0018s08380.1
Predicted protein (889 aa)
   
 
  0.720
POPTR_0008s18700.1
Predicted protein (177 aa)
   
 
  0.720
POPTR_0008s18540.1
Heavy metal ATPase (75 aa)
   
 
  0.720
POPTR_0008s18530.1
Predicted protein (134 aa)
   
 
  0.720
POPTR_0008s18480.1
Heavy metal ATPase (184 aa)
   
 
  0.720
POPTR_0007s10480.1
Hypothetical protein (767 aa)
   
 
  0.720
POPTR_0006s23690.1
Hypothetical protein (774 aa)
   
 
  0.720
POPTR_0006s07650.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFS8_POPTR] (1188 aa)
   
 
  0.720
POPTR_0005s18630.1
Predicted protein (135 aa)
   
 
  0.720
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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