STRINGSTRING
POPTR_0001s21400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21400.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21400.1Predicted protein (449 aa)    
Predicted Functional Partners:
POPTR_0535s00200.1
Predicted protein (140 aa)
              0.451
POPTR_0031s00410.1
Uncharacterized protein (100 aa)
              0.451
POPTR_0019s00400.1
Annotation not available (100 aa)
              0.451
POPTR_0019s00360.1
Uncharacterized protein (168 aa)
              0.451
POPTR_0013s02230.1
Predicted protein (673 aa)
              0.451
POPTR_0013s00860.1
Predicted protein (484 aa)
              0.451
POPTR_0009s16090.1
Predicted protein (404 aa)
              0.451
POPTR_0009s03050.1
Predicted protein (284 aa)
              0.451
POPTR_0007s12430.1
Predicted protein (677 aa)
              0.451
POPTR_0006s15400.1
Predicted protein (224 aa)
              0.451
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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