STRINGSTRING
POPTR_0001s21550.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21550.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21550.1Predicted protein (424 aa)    
Predicted Functional Partners:
POPTR_0015s04220.1
Predicted protein (255 aa)
     
      0.918
POPTR_0014s06990.1
Histone deacetylase complex protein [source-UniProtKB/TrEMBL;Acc-B9IC42_POPTR] (114 aa)
       
  0.820
POPTR_0003s11920.1
Histone deacetylase complex protein [source-UniProtKB/TrEMBL;Acc-B9GW42_POPTR] (160 aa)
       
  0.820
POPTR_0002s15280.1
Histone deacetylase complex protein [source-UniProtKB/TrEMBL;Acc-B9GPT2_POPTR] (151 aa)
       
  0.820
POPTR_0003s01630.1
Uncharacterized protein (392 aa)
         
 
0.800
POPTR_0010s08710.1
Predicted protein (225 aa)
     
      0.726
POPTR_0006s12310.1
Predicted protein (331 aa)
       
      0.705
POPTR_0005s11060.1
Predicted protein (722 aa)
     
        0.495
POPTR_0019s03800.1
Chromatin remodeling complex subunit (495 aa)
     
        0.462
POPTR_0001s31900.1
Predicted protein (246 aa)
     
 
  0.442
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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