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POPTR_0001s21620.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21620.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21620.1Uncharacterized protein (800 aa)    
Predicted Functional Partners:
POPTR_0014s02710.1
Predicted protein (450 aa)
     
  0.986
POPTR_0015s10540.1
Predicted protein (401 aa)
     
  0.986
POPTR_0002s12650.1
Predicted protein (154 aa)
     
  0.986
POPTR_0001s41290.1
Predicted protein (554 aa)
     
 
  0.975
POPTR_0017s06640.1
Midasin (5317 aa)
     
 
  0.954
POPTR_0004s12080.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAA4_POPTR]; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (604 aa)
     
 
  0.953
POPTR_0017s12520.1
Predicted protein (225 aa)
     
 
  0.950
POPTR_0011s15980.1
Predicted protein (229 aa)
     
  0.949
POPTR_0001s46440.1
Predicted protein (229 aa)
     
  0.949
POPTR_0009s05870.1
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (674 aa)
     
 
  0.939
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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