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POPTR_0001s21690.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21690.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
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[Homology]
Score
POPTR_0001s21690.1Predicted protein (249 aa)    
Predicted Functional Partners:
POPTR_0004s10180.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH66_POPTR] (285 aa)
   
   
  0.559
POPTR_0005s08630.1
Predicted protein (321 aa)
   
        0.537
POPTR_0018s00510.1
Uncharacterized protein (501 aa)
   
     
  0.527
POPTR_0015s04810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PID9_POPTR] (204 aa)
   
        0.525
POPTR_0002s16850.1
Predicted protein (160 aa)
   
        0.524
POPTR_0014s08960.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH76_POPTR] (164 aa)
   
        0.523
POPTR_0004s08950.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHY1_POPTR] (518 aa)
   
        0.521
POPTR_0005s05630.1
Predicted protein (281 aa)
   
          0.519
POPTR_0010s09590.1
Predicted protein (559 aa)
   
          0.518
POPTR_0002s19710.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHK5_POPTR] (127 aa)
   
          0.518
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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