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POPTR_0001s21840.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21840.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21840.1Uncharacterized protein (215 aa)    
Predicted Functional Partners:
POPTR_0010s09190.1
Emp24/gp25L/p24 family protein (194 aa)
     
 
  0.988
POPTR_0001s37760.1
Emp24/gp25L/p24 family protein (213 aa)
     
 
  0.988
POPTR_0011s00460.1
Uncharacterized protein (353 aa)
     
      0.899
POPTR_0003s09540.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (115 aa)
     
        0.861
POPTR_0001s01950.1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (115 aa)
     
        0.860
POPTR_0010s06920.1
Uncharacterized protein (98 aa)
     
        0.846
POPTR_0008s17580.1
Uncharacterized protein (158 aa)
     
        0.846
POPTR_0014s05810.2
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum (82 aa)
     
   
  0.823
POPTR_0009s01720.1
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum (106 aa)
     
   
  0.823
POPTR_0002s14410.2
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum (84 aa)
     
   
  0.823
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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