STRINGSTRING
POPTR_0001s21950.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s21950.1" - Serine hydroxymethyltransferase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s21950.1Serine hydroxymethyltransferase ; Interconversion of serine and glycine (578 aa)    
Predicted Functional Partners:
POPTR_0018s05150.1
Uncharacterized protein (804 aa)
   
 
  0.996
POPTR_0006s24570.1
Precursor of carboxylase p-protein 1, glycine decarboxylase complex [source-UniProtKB/TrEMBL;Acc-B9HDN2_POPTR] (1060 aa)
   
 
  0.995
POPTR_0010s12460.1
Aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase [source-UniProtKB/TrEMBL;Acc-B9HW83_POPTR] (545 aa)
   
  0.990
POPTR_0009s12200.1
Dihydrofolate reductase-thymidylate synthase [source-UniProtKB/TrEMBL;Acc-B9HRK6_POPTR]; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
 
  0.987
POPTR_0004s16470.1
Bifunctional dihydrofolate reductase-thymidylate synthase [source-UniProtKB/TrEMBL;Acc-B9H0T4_POPTR]; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
 
  0.987
POPTR_0021s00380.1
Precursor of carboxylase t-protein 1, glycine decarboxylase complex [source-UniProtKB/TrEMBL;Acc-B9HZ70_POPTR]; The glycine cleavage system catalyzes the degradation of glycine (408 aa)
   
  0.983
POPTR_0004s01030.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PF34_POPTR]; The glycine cleavage system catalyzes the degradation of glycine (408 aa)
   
  0.983
POPTR_0015s15290.1
Precursor of carboxylase h-protein 2, glycine decarboxylase complex [source-UniProtKB/TrEMBL;Acc-B9ICP5_POPTR] (155 aa)
   
 
  0.981
POPTR_0012s14960.1
Precursor of carboxylase h-protein 1, glycine decarboxylase complex [source-UniProtKB/TrEMBL;Acc-B9I4Q6_POPTR] (155 aa)
   
 
  0.981
POPTR_0003s08760.1
Precursor of carboxylase h-protein 3, glycine decarboxylase complexPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PG07_POPTR] (165 aa)
   
 
  0.981
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]