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POPTR_0001s22300.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s22300.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s22300.1Predicted protein (359 aa)    
Predicted Functional Partners:
POPTR_0016s14620.1
Uncharacterized protein (501 aa)
     
 
  0.941
POPTR_0009s07340.1
Predicted protein (296 aa)
   
 
  0.657
POPTR_0010s17290.1
Predicted protein (120 aa)
   
 
  0.630
POPTR_0008s08940.1
Predicted protein (148 aa)
   
 
  0.630
POPTR_0007s14010.1
Predicted protein (82 aa)
   
 
  0.630
POPTR_0004s03950.1
Predicted protein (269 aa)
   
   
  0.598
POPTR_0133s00270.1
Predicted protein (154 aa)
   
   
  0.597
POPTR_0003s01470.1
beta-hydroxyacyl-ACP dehydratase family protein (161 aa)
   
   
  0.597
POPTR_0001s21730.1
Predicted protein (86 aa)
   
   
  0.597
POPTR_0014s15230.1
Predicted protein (447 aa)
   
   
  0.587
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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