• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s23120.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s23120.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s23120.1Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family (468 aa)    
Predicted Functional Partners:
POPTR_0609s00200.1
annotation not available (522 aa)
   
   
  0.738
POPTR_0019s09740.1
Endoglucanase (486 aa)
         
  0.680
POPTR_0010s25590.1
annotation not available (279 aa)
         
  0.669
POPTR_0008s01010.1
Uncharacterized protein; Belongs to the GMC oxidoreductase family (462 aa)
         
  0.669
POPTR_0011s15780.1
Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family (897 aa)
       
  0.665
POPTR_0011s15750.1
Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family (1691 aa)
       
  0.665
POPTR_0001s43340.1
Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family (885 aa)
       
  0.665
POPTR_0002s21650.1
Glycosyl hydrolase family 9 family protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family (333 aa)
         
  0.660
GH9B14
Endoglucanase (494 aa)
     
 
    0.658
POPTR_0609s00210.1
annotation not available (365 aa)
         
  0.654
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]