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POPTR_0001s23230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s23230.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s23230.1Predicted protein (390 aa)    
Predicted Functional Partners:
POPTR_0004s23930.1
Putative chloroplast 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [source-UniProtKB/TrEMBL;Acc-B3GEM2_POPTR] (309 aa)
 
 
  0.992
POPTR_0003s13230.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PB62_POPTR] (233 aa)
 
 
  0.985
POPTR_0001s09860.1
Predicted protein (235 aa)
 
 
  0.985
POPTR_0015s08740.1
Predicted protein (471 aa)
   
   
  0.824
POPTR_0012s08230.1
Putative chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase [source-UniProtKB/TrEMBL;Acc-B3GEM1_POPTR] (471 aa)
   
   
  0.824
POPTR_0004s22010.1
Predicted protein (760 aa)
   
   
  0.823
POPTR_0009s01900.1
Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [source-UniProtKB/TrEMBL;Acc-B3GEM5_POPTR] (741 aa)
   
   
  0.822
POPTR_0009s02690.1
Putative chloroplast 4-(Cytidine 5’-diphospho)-2-C-methyl-D-erythritol kinase [source-UniProtKB/TrEMBL;Acc-B3GEM3_POPTR] (392 aa)
   
   
 
0.801
POPTR_0004s15760.1
Predicted protein (460 aa)
 
   
  0.778
POPTR_0009s11480.1
Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [source-UniProtKB/TrEMBL;Acc-B3GEM6_POPTR] (460 aa)
 
   
  0.775
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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