STRINGSTRING
POPTR_0001s23540.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s23540.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s23540.1Predicted protein (786 aa)    
Predicted Functional Partners:
POPTR_0002s18850.1
Multidrug/pheromone exporter, MDR family, ABC transporter family (1275 aa)
     
        0.470
POPTR_0006s10760.1
Predicted protein (321 aa)
     
        0.459
POPTR_0019s11830.1
Hypothetical protein; Lignin degradation and detoxification of lignin-derived products (567 aa)
     
        0.454
POPTR_0005s14060.1
Predicted protein (244 aa)
     
        0.431
POPTR_0009s14290.1
Lysine/histidine transporter [source-UniProtKB/TrEMBL;Acc-B9HR02_POPTR] (515 aa)
     
        0.425
POPTR_0009s03200.1
Predicted protein (604 aa)
     
        0.424
POPTR_0012s05280.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9I2L8_POPTR] (321 aa)
     
        0.419
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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