STRINGSTRING
POPTR_0001s23840.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s23840.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s23840.1Predicted protein (129 aa)    
Predicted Functional Partners:
POPTR_0017s08020.1
Predicted protein (384 aa)
           
  0.442
POPTR_0012s05750.1
Predicted protein (695 aa)
           
  0.442
POPTR_0011s07810.1
Uncharacterized protein (539 aa)
           
  0.442
POPTR_0004s05160.1
Predicted protein (558 aa)
           
  0.442
POPTR_0018s05800.1
Predicted protein (629 aa)
           
  0.424
POPTR_0014s15180.1
Predicted protein; Regulatory subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1 (521 aa)
           
  0.424
POPTR_0014s15150.1
Predicted protein (148 aa)
           
  0.424
POPTR_0012s06330.1
Predicted protein (137 aa)
           
  0.424
POPTR_0012s06310.1
Predicted protein; Regulatory subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1 (523 aa)
           
  0.424
POPTR_0003s05270.1
Predicted protein (713 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (15%) [HD]