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POPTR_0001s23990.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s23990.1" - Endoplasmic reticulum [ER]-type calcium ATPase in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s23990.1Endoplasmic reticulum [ER]-type calcium ATPase (969 aa)    
Predicted Functional Partners:
POPTR_0006s06810.1
Predicted protein (168 aa)
   
 
  0.782
POPTR_0006s01760.1
Predicted protein (143 aa)
   
 
  0.687
POPTR_0014s07660.1
Potassium efflux antiporter (1215 aa)
   
 
  0.682
POPTR_0009s08430.1
Potassium efflux antiporter (819 aa)
     
 
  0.674
POPTR_0002s15860.1
Potassium efflux antiporter (1089 aa)
     
 
  0.674
POPTR_0015s01950.1
Predicted protein (2228 aa)
   
   
  0.674
POPTR_0012s01860.1
Predicted protein (2230 aa)
   
   
  0.658
POPTR_0006s12900.1
Uncharacterized protein (1291 aa)
   
 
  0.649
POPTR_0016s09210.1
EIN2-like protein, nramp transporter (1234 aa)
   
 
  0.645
POPTR_0007s10320.1
Nramp transporter (500 aa)
   
 
  0.644
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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