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POPTR_0001s26050.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s26050.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s26050.1Predicted protein (338 aa)    
Predicted Functional Partners:
POPTR_0018s13160.1
Predicted protein (286 aa)
   
 
  0.956
POPTR_0006s06900.1
Predicted protein (285 aa)
   
 
  0.956
POPTR_0014s03350.1
Predicted protein (323 aa)
   
 
  0.939
POPTR_0009s05270.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002313332.1] (257 aa)
   
   
 
0.801
POPTR_0003s04030.1
Uncharacterized protein (384 aa)
       
 
  0.684
POPTR_0001s47450.1
Predicted protein (148 aa)
       
 
  0.676
POPTR_0013s00220.1
Phytochrome [source-UniProtKB/TrEMBL;Acc-B9I6A9_POPTR]; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1126 aa)
           
  0.616
POPTR_0003s04040.1
Predicted protein (417 aa)
       
 
  0.601
POPTR_0010s15600.1
Photochrome B2 [source-UniProtKB/TrEMBL;Acc-D2TE99_POPTR]; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1134 aa)
           
  0.586
POPTR_0008s10470.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HIN5_POPTR]; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1142 aa)
           
  0.586
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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