STRINGSTRING
POPTR_0001s26070.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s26070.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s26070.1Uncharacterized protein (220 aa)    
Predicted Functional Partners:
POPTR_0017s08400.1
annotation not available (66 aa)
     
 
  0.739
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
   
   
  0.730
POPTR_0005s20960.1
annotation not available (210 aa)
     
 
  0.728
POPTR_0001s06710.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBX8_POPTR] (136 aa)
     
 
  0.708
POPTR_0010s16260.1
Peroxiredoxin family protein (136 aa)
   
        0.688
POPTR_0008s09930.1
Peroxiredoxin family protein; 1-cys peroxiredoxin [source-UniProtKB/TrEMBL;Acc-B9HII6_POPTR] (220 aa)
   
        0.688
POPTR_0019s07820.1
annotation not available (78 aa)
     
 
  0.638
POPTR_0019s07810.1
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (88 aa)
     
 
  0.638
POPTR_0013s07910.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCJ8_POPTR] (57 aa)
     
 
  0.634
POPTR_0010s06750.1
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain (485 aa)
     
 
  0.628
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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