STRINGSTRING
POPTR_0001s26540.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s26540.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s26540.1Predicted protein (225 aa)    
Predicted Functional Partners:
POPTR_0005s16540.1
Predicted protein (2268 aa)
       
      0.923
POPTR_0002s09330.1
Predicted protein (2276 aa)
       
      0.923
POPTR_0013s10840.1
Hypothetical protein (42 aa)
 
 
 
  0.788
POPTR_0010s04010.1
Uncharacterized protein (114 aa)
     
 
  0.787
rbcL
Ribulose bisphosphate carboxylase large chain [source-UniProtKB/Swiss-Prot;Acc-RBL_POPTR]; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (70 aa)
     
 
  0.759
POPTR_0011s01520.1
Predicted protein (172 aa)
     
   
  0.689
POPTR_0019s09140.1
Light-harvesting complex II protein Lhcb5Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGZ3_POPTR] (290 aa)
     
      0.612
POPTR_0004s01990.1
Predicted protein (350 aa)
     
      0.582
POPTR_0011s00500.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHI1_POPTR] (350 aa)
     
      0.574
POPTR_0011s13820.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEX7_POPTR] (357 aa)
     
      0.562
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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