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POPTR_0001s26620.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s26620.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s26620.1Uncharacterized protein (512 aa)    
Predicted Functional Partners:
POPTR_0005s06740.1
Glucose-inhibited division family A protein (730 aa)
   
 
  0.870
POPTR_0012s07530.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC34_POPTR] (375 aa)
     
   
  0.862
ACLL2
AMP-dependent synthetase and ligase family protein; Acyl-coa ligase [source-UniProtKB/TrEMBL;Acc-B9ID90_POPTR] (524 aa)
         
  0.747
POPTR_0001s09200.1
Uncharacterized protein (522 aa)
         
  0.747
POPTR_0006s12460.1
Uncharacterized protein; Rhodanese/Cell cycle control phosphatase superfamily protein (87 aa)
           
  0.741
POPTR_0606s00200.1
annotation not available (343 aa)
   
 
  0.740
POPTR_0009s05900.1
Uncharacterized protein (651 aa)
   
 
  0.740
POPTR_0004s23950.1
Uncharacterized protein (560 aa)
   
 
  0.740
POPTR_0002s09320.1
Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family (550 aa)
   
 
  0.740
POPTR_0009s08760.1
Uncharacterized protein (662 aa)
   
   
  0.707
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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