• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s26630.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s26630.1" - Aldehyde dehydrogenase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s26630.1Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family (485 aa)    
Predicted Functional Partners:
POPTR_0004s06560.1
Alcohol dehydrogenase family protein (378 aa)
   
  0.914
GSH-FDH2
Uncharacterized protein; Glutathione-dependent formaldehyde dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9IBD3_POPTR] (374 aa)
   
  0.913
GSH-FDH1
Glutathione-dependent formaldehyde dehydrogenase [source-UniProtKB/TrEMBL;Acc-B9GRB3_POPTR]; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily (379 aa)
   
  0.913
POPTR_0002s01480.1
Uncharacterized protein (445 aa)
   
  0.877
POPTR_0017s00800.1
Uncharacterized protein; Belongs to the TPP enzyme family (582 aa)
     
  0.846
POPTR_0011s07630.1
Pyruvate decarboxylase family protein; Belongs to the TPP enzyme family (593 aa)
     
  0.846
POPTR_0004s05330.1
Pyruvate decarboxylase family protein; Belongs to the TPP enzyme family (582 aa)
     
  0.846
POPTR_0011s15600.1
Uncharacterized protein (428 aa)
   
  0.844
POPTR_0001s45280.1
Uncharacterized protein (421 aa)
   
  0.844
POPTR_0017s10680.1
Uncharacterized protein (281 aa)
     
  0.844
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]