STRINGSTRING
POPTR_0001s27380.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s27380.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s27380.1Predicted protein (160 aa)    
Predicted Functional Partners:
POPTR_0015s05970.1
Predicted protein (1341 aa)
     
 
  0.823
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
 
  0.782
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
   
 
  0.782
POPTR_0014s17840.1
Predicted protein (1189 aa)
     
 
  0.778
POPTR_0001s21470.1
Uncharacterized protein (287 aa)
       
  0.652
POPTR_0005s06690.1
Predicted protein (1088 aa)
     
 
  0.623
POPTR_0018s06880.1
Uncharacterized protein (247 aa)
     
 
  0.610
POPTR_0018s06870.1
Annotation not available (174 aa)
     
 
  0.610
POPTR_0016s05810.1
Predicted protein (451 aa)
     
 
  0.610
POPTR_0006s15110.1
Annotation not available (171 aa)
     
 
  0.610
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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