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POPTR_0001s27890.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s27890.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s27890.1Predicted protein (404 aa)    
Predicted Functional Partners:
POPTR_0004s22710.1
Putative uncharacterized proteinRegulatory subunit of cyclin-dependent kinase [source-UniProtKB/TrEMBL;Acc-A9PE37_POPTR]; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (129 aa)
     
  0.973
POPTR_0018s09330.1
Predicted protein (760 aa)
     
  0.967
POPTR_0006s17730.1
Uncharacterized protein (760 aa)
     
  0.967
POPTR_0014s12690.1
Putative uncharacterized protein Wee1-2 [source-UniProtKB/TrEMBL;Acc-B9I9U2_POPTR] (473 aa)
     
  0.964
POPTR_0002s20940.1
Annotation not available (406 aa)
     
  0.964
POPTR_0019s03850.1
Predicted protein (450 aa)
     
  0.962
POPTR_0016s12590.1
Predicted protein (459 aa)
     
  0.962
POPTR_0013s04640.1
Predicted protein (455 aa)
     
  0.962
POPTR_0003s11940.1
Predicted protein (492 aa)
     
  0.962
POPTR_0001s08450.1
Hypothetical protein (293 aa)
     
  0.962
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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