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POPTR_0001s28040.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s28040.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s28040.1Uncharacterized protein (270 aa)    
Predicted Functional Partners:
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
 
  0.642
POPTR_0005s26260.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8B9_POPTR] (823 aa)
       
 
  0.592
POPTR_0005s10480.1
Homeobox-leucine zipper family protein; WOX13 protein [source-UniProtKB/TrEMBL;Acc-A0AAU3_POPTR] (248 aa)
     
 
  0.552
POPTR_0005s27410.1
Uncharacterized protein (216 aa)
     
 
  0.549
POPTR_0006s12490.1
Uncharacterized protein; Phosphoadenosine phosphosulfate (PAPS) reductase family protein (482 aa)
           
  0.483
POPTR_0016s02100.1
Uncharacterized protein; Belongs to the heat shock protein 70 family (881 aa)
     
 
  0.422
POPTR_0006s02290.1
Uncharacterized protein; Belongs to the heat shock protein 70 family (899 aa)
     
 
  0.422
POPTR_0014s12620.1
Uncharacterized protein (132 aa)
       
 
  0.418
POPTR_0010s02580.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBT9_POPTR] (88 aa)
       
 
  0.418
POPTR_0002s25170.1
YGGT family protein (251 aa)
           
  0.407
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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