STRINGSTRING
POPTR_0001s29310.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s29310.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s29310.1Predicted protein (542 aa)    
Predicted Functional Partners:
POPTR_0015s11320.1
Predicted protein (498 aa)
 
  0.997
POPTR_0012s10480.1
Uncharacterized protein (371 aa)
 
  0.997
POPTR_0013s00230.1
Predicted protein (725 aa)
         
  0.943
POPTR_0009s17070.1
Predicted protein (574 aa)
         
  0.943
POPTR_0005s00300.1
Predicted protein (728 aa)
         
  0.943
POPTR_0001s16620.1
Predicted protein (324 aa)
     
 
  0.919
POPTR_0010s25670.1
Predicted protein (327 aa)
       
 
  0.918
POPTR_0002s08280.1
Predicted protein (430 aa)
 
 
  0.859
POPTR_0001s23400.1
Predicted protein (373 aa)
 
 
  0.852
POPTR_0002s10870.1
Predicted protein (556 aa)
   
   
 
0.802
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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