STRINGSTRING
POPTR_0001s29600.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s29600.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s29600.1Predicted protein (666 aa)    
Predicted Functional Partners:
POPTR_0006s08550.1
Predicted protein (564 aa)
   
0.850
POPTR_0008s17260.1
Predicted protein (538 aa)
 
  0.846
POPTR_0013s10990.1
Predicted protein (426 aa)
     
 
  0.812
POPTR_0013s09940.1
Predicted protein (372 aa)
     
 
  0.812
POPTR_0001s21240.1
Annotation not available (264 aa)
   
  0.808
POPTR_0010s07520.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002314476.1] (488 aa)
   
  0.806
POPTR_0009s08760.1
Predicted protein (662 aa)
   
 
 
0.805
POPTR_0014s04810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI70_POPTR] (1078 aa)
   
   
  0.796
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial ; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) (541 aa)
   
  0.757
POPTR_1567s00200.1
Uncharacterized protein (338 aa)
   
  0.728
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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