STRINGSTRING
POPTR_0001s30210.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s30210.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s30210.1Predicted protein (373 aa)    
Predicted Functional Partners:
POPTR_0016s03060.1
Predicted protein (661 aa)
         
  0.664
POPTR_0014s11630.1
Predicted protein (353 aa)
   
   
  0.575
POPTR_0018s02560.1
Predicted protein (386 aa)
   
   
  0.561
POPTR_0014s07310.1
Predicted protein (339 aa)
   
   
  0.561
POPTR_0003s12830.1
Predicted protein (534 aa)
   
   
  0.533
POPTR_0018s09080.1
Predicted protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (987 aa)
   
        0.525
POPTR_0606s00200.1
Uncharacterized protein (343 aa)
   
 
  0.507
POPTR_0009s05900.1
Predicted protein (651 aa)
   
 
  0.507
POPTR_0004s23950.1
Predicted protein (560 aa)
   
 
  0.507
POPTR_0008s03540.1
Predicted protein (397 aa)
   
      0.503
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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