STRINGSTRING
POPTR_0001s30830.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s30830.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s30830.1Predicted protein (586 aa)    
Predicted Functional Partners:
POPTR_0009s08430.1
Potassium efflux antiporter (819 aa)
   
   
  0.530
POPTR_0009s14920.1
Predicted protein (254 aa)
   
   
  0.521
POPTR_0003s12830.1
Predicted protein (534 aa)
         
  0.515
POPTR_0004s19750.1
Predicted protein (251 aa)
   
   
  0.496
POPTR_0010s23200.1
Predicted protein (407 aa)
   
   
  0.474
POPTR_0018s11090.1
Predicted protein (249 aa)
              0.451
POPTR_0009s08190.1
Predicted protein (241 aa)
              0.451
POPTR_0008s03690.1
Predicted protein (407 aa)
   
   
  0.450
POPTR_0006s04760.1
Predicted protein (510 aa)
   
   
  0.446
POPTR_0014s07410.1
Predicted protein; ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insert [...] (409 aa)
         
  0.445
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (8%) [HD]