STRINGSTRING
POPTR_0001s32340.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s32340.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s32340.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002338310.1] (119 aa)    
Predicted Functional Partners:
POPTR_0009s10050.1
Predicted protein (323 aa)
     
  0.988
POPTR_0006s01070.1
Predicted protein (541 aa)
     
  0.986
POPTR_0005s02780.1
Predicted protein (334 aa)
     
  0.984
POPTR_0009s07520.1
Predicted protein (116 aa)
     
  0.981
POPTR_0002s05500.1
Predicted protein (758 aa)
       
  0.980
POPTR_0015s03060.1
Predicted protein (309 aa)
     
  0.980
POPTR_0015s03050.1
Annotation not available (148 aa)
     
  0.980
POPTR_0010s11250.1
Predicted protein (444 aa)
     
  0.980
POPTR_0008s13880.1
Predicted protein (74 aa)
     
  0.980
POPTR_0004s04170.1
Predicted protein (449 aa)
     
    0.980
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (12%) [HD]