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POPTR_0001s32550.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s32550.1" - DNA topoisomerase in Populus trichocarpa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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POPTR_0001s32550.1DNA topoisomerase ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (317 aa)    
Predicted Functional Partners:
POPTR_0018s14280.1
Uncharacterized protein (1113 aa)
     
 
  0.824
POPTR_0006s07760.1
Predicted protein (985 aa)
     
 
  0.824
POPTR_0004s23750.1
Predicted protein (1012 aa)
     
 
  0.824
POPTR_0019s08480.1
Uncharacterized protein (156 aa)
     
 
  0.769
POPTR_0019s08470.1
Uncharacterized protein (404 aa)
     
 
  0.769
POPTR_0015s02200.1
Predicted protein (1357 aa)
     
 
  0.769
POPTR_0014s09320.1
Hypothetical protein (1022 aa)
     
 
  0.769
POPTR_0014s09310.1
Predicted protein (329 aa)
     
 
  0.769
POPTR_0014s06140.1
Predicted protein (1566 aa)
     
 
  0.769
POPTR_0012s01560.1
Predicted protein (1336 aa)
     
 
  0.769
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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