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POPTR_0001s32860.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s32860.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s32860.1Uncharacterized protein (186 aa)    
Predicted Functional Partners:
POPTR_0018s12080.1
Predicted protein (726 aa)
     
  0.996
POPTR_0006s20300.1
Predicted protein (726 aa)
     
  0.996
POPTR_0012s05670.1
Predicted protein; Component of the post-replicative DNA mismatch repair system (MMR) (944 aa)
     
  0.989
POPTR_0014s11610.1
Predicted protein (718 aa)
     
  0.987
POPTR_0001s22140.1
Predicted protein (981 aa)
     
  0.987
POPTR_0018s09930.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002325011.1] (164 aa)
     
  0.986
POPTR_0018s09920.1
Annotation not available (129 aa)
     
  0.986
POPTR_0006s29060.1
Predicted protein (282 aa)
     
  0.986
POPTR_0006s18320.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002329619.1] (164 aa)
     
  0.986
POPTR_0019s03130.1
Predicted protein (738 aa)
     
  0.982
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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