STRINGSTRING
POPTR_0001s33730.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s33730.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s33730.1Predicted protein (329 aa)    
Predicted Functional Partners:
POPTR_0005s08950.1
Predicted protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (817 aa)
 
  0.999
POPTR_0007s07100.1
Predicted protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (812 aa)
 
  0.999
POPTR_0005s21680.1
Predicted protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (810 aa)
 
  0.999
POPTR_0009s12200.1
Dihydrofolate reductase-thymidylate synthase [source-UniProtKB/TrEMBL;Acc-B9HRK6_POPTR]; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
   
  0.998
POPTR_0004s16470.1
Bifunctional dihydrofolate reductase-thymidylate synthase [source-UniProtKB/TrEMBL;Acc-B9H0T4_POPTR]; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
   
  0.998
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.992
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
 
  0.992
POPTR_0018s12080.1
Predicted protein (726 aa)
     
   
  0.987
POPTR_0006s20300.1
Predicted protein (726 aa)
     
   
  0.987
POPTR_0001s36370.1
Predicted protein (222 aa)
     
  0.936
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]