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POPTR_0001s33750.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s33750.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s33750.1Predicted protein (343 aa)    
Predicted Functional Partners:
POPTR_0011s16700.1
Predicted protein (590 aa)
   
 
  0.966
POPTR_0010s14560.1
Predicted protein (1686 aa)
   
 
  0.851
POPTR_0012s07180.1
Isochorismate synthase [source-UniProtKB/TrEMBL;Acc-B9I302_POPTR] (572 aa)
 
     
  0.749
POPTR_0010s00640.1
Predicted protein (166 aa)
 
   
  0.719
POPTR_0010s00620.1
Predicted protein (164 aa)
 
   
  0.708
POPTR_0017s07770.1
Predicted protein (401 aa)
 
   
  0.679
POPTR_0017s02150.1
Acyl-coa ligase acetate-coa synthetase-like protein [source-UniProtKB/TrEMBL;Acc-B9GUB7_POPTR] (586 aa)
   
 
  0.669
POPTR_0004s00210.1
Acyl-coa ligase acetate-coa synthetase-like protein (ACLL5), mRNA [source-RefSeq DNA_predicted;Acc-XM_002331502.1] (478 aa)
   
 
  0.669
POPTR_0019s07600.1
4-Coumarate-CoA ligasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGE3_POPTR] (570 aa)
   
 
  0.668
POPTR_0004s08030.1
Acyl-coa ligase acetate-coa synthetase-like proteinPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHB5_POPTR] (584 aa)
   
 
  0.668
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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