STRINGSTRING
POPTR_0001s33770.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s33770.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s33770.1Predicted protein (322 aa)    
Predicted Functional Partners:
POPTR_0017s10740.1
Predicted protein (454 aa)
   
   
  0.664
POPTR_0017s09850.1
Predicted protein (477 aa)
   
   
  0.664
POPTR_0011s16790.1
Predicted protein (482 aa)
   
   
  0.664
POPTR_0001s47190.1
Predicted protein (449 aa)
   
   
  0.664
POPTR_0001s33950.1
Predicted protein (481 aa)
   
   
  0.664
POPTR_0014s06330.1
Predicted protein (464 aa)
   
 
  0.662
POPTR_0017s05790.1
Predicted protein (360 aa)
   
 
  0.659
POPTR_0007s01880.1
Predicted protein (139 aa)
   
 
  0.659
POPTR_0006s29400.1
Predicted protein; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1120 aa)
         
  0.656
POPTR_0017s08450.1
Predicted protein (801 aa)
   
   
  0.616
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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