STRINGSTRING
POPTR_0001s33780.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s33780.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s33780.1Predicted protein (206 aa)    
Predicted Functional Partners:
POPTR_0013s00600.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9I6M9_POPTR] (1111 aa)
            
  0.520
POPTR_0013s00590.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9I6M8_POPTR] (1082 aa)
            
  0.520
POPTR_0005s00700.1
Uncharacterized protein (1069 aa)
            
  0.520
POPTR_0005s00690.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9N434_POPTR] (1065 aa)
            
  0.520
POPTR_0014s01090.1
Uncharacterized protein (316 aa)
      
 
  0.512
POPTR_0014s00670.1
Predicted protein (316 aa)
      
 
  0.512
POPTR_0007s15420.1
Predicted protein (316 aa)
      
 
  0.512
POPTR_0014s16030.1
Predicted protein (686 aa)
        
      0.507
POPTR_0022s00790.1
Uncharacterized protein (149 aa)
            
  0.495
POPTR_0001s33710.1
Predicted protein (194 aa)
            
  0.450
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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