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POPTR_0001s34650.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s34650.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s34650.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002299986.1] (95 aa)    
Predicted Functional Partners:
POPTR_0013s10270.1
Predicted protein (316 aa)
   
 
  0.789
POPTR_0013s10290.1
Predicted protein (355 aa)
   
 
  0.781
POPTR_0017s02330.1
Uncharacterized protein (398 aa)
   
 
  0.749
POPTR_0005s20960.1
Uncharacterized protein (210 aa)
     
  0.748
POPTR_0004s08110.1
Predicted protein (736 aa)
   
 
  0.663
POPTR_0014s18680.1
Predicted protein (384 aa)
   
 
  0.659
POPTR_0002s25720.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE76_POPTR] (399 aa)
   
 
  0.652
POPTR_0007s14910.1
Predicted protein (159 aa)
   
 
    0.644
POPTR_0002s11860.1
Predicted protein (149 aa)
   
 
    0.634
POPTR_0001s07730.1
Predicted protein (301 aa)
     
 
  0.622
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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