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POPTR_0001s34760.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s34760.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s34760.1Predicted protein (184 aa)    
Predicted Functional Partners:
POPTR_0006s11420.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC28_POPTR] (224 aa)
     
        0.639
POPTR_0001s45510.1
Predicted protein (230 aa)
     
        0.636
POPTR_0016s14970.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8K2_POPTR] (227 aa)
     
        0.631
POPTR_0001s40700.1
Predicted protein (182 aa)
     
        0.629
POPTR_0013s06700.1
Predicted protein (139 aa)
     
        0.625
POPTR_0014s08500.1
Predicted protein (262 aa)
     
        0.624
POPTR_0002s15600.1
Predicted protein (266 aa)
     
        0.624
POPTR_0013s11720.1
Predicted protein (257 aa)
     
        0.618
POPTR_0011s07530.1
Predicted protein (160 aa)
     
        0.615
POPTR_0019s11310.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEU7_POPTR] (225 aa)
     
        0.609
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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