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POPTR_0001s34980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s34980.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s34980.1Predicted protein; Catalyzes the oxidation of L-aspartate to iminoaspartate (650 aa)    
Predicted Functional Partners:
POPTR_0015s09690.1
Predicted protein (721 aa)
   
  0.998
POPTR_0010s15590.1
Predicted protein (616 aa)
         
  0.916
POPTR_0008s10480.1
Predicted protein (608 aa)
         
  0.916
POPTR_0006s23950.1
Predicted protein (373 aa)
       
  0.915
POPTR_0019s10040.1
Predicted protein (864 aa)
         
  0.914
POPTR_0013s10510.1
Predicted protein (922 aa)
         
  0.914
POPTR_0001s36730.1
Predicted protein (283 aa)
       
  0.908
POPTR_0010s24550.1
Predicted protein (512 aa)
         
  0.908
POPTR_0008s02110.1
Predicted protein (494 aa)
         
  0.908
POPTR_0012s09130.1
Predicted protein (421 aa)
         
  0.901
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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