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POPTR_0001s35190.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s35190.1" - Peptide deformylase [source:UniProtKB/TrEMBL in Populus trichocarpa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
POPTR_0001s35190.1Peptide deformylase [source-UniProtKB/TrEMBL;Acc-B9GI48_POPTR]; Removes the formyl group from the N-terminal Met of newly synthesized proteins (269 aa)    
Predicted Functional Partners:
POPTR_0006s11420.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC28_POPTR] (224 aa)
     
 
  0.782
POPTR_0016s14970.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8K2_POPTR] (227 aa)
     
 
  0.776
POPTR_0007s04040.1
Predicted protein (160 aa)
     
 
  0.776
POPTR_0005s06290.1
Predicted protein (160 aa)
     
 
  0.776
POPTR_0015s10650.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE02_POPTR] (181 aa)
     
      0.723
POPTR_0012s09860.1
Predicted protein (181 aa)
     
      0.723
POPTR_0010s07020.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PA96_POPTR] (178 aa)
     
      0.723
POPTR_0008s17560.1
Predicted protein (178 aa)
     
      0.723
POPTR_0016s06740.1
Predicted protein (278 aa)
     
      0.718
POPTR_0006s29400.1
Predicted protein; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1120 aa)
   
   
  0.685
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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