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POPTR_0001s35400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s35400.1" - RNA recognition motif-containing family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s35400.1RNA recognition motif-containing family protein (107 aa)    
Predicted Functional Partners:
POPTR_0003s20160.1
Uncharacterized protein; Belongs to the peptidase C19 family (543 aa)
     
      0.610
POPTR_0017s08270.1
Ubiquitinyl hydrolase 1 (910 aa)
       
 
  0.583
POPTR_0001s32280.1
Ubiquitinyl hydrolase 1 (925 aa)
       
 
  0.583
POPTR_0010s01650.1
PP1/PP2A phosphatases pleiotropic regulator PRL2 family protein (480 aa)
     
 
  0.563
POPTR_0010s07900.1
Uncharacterized protein (506 aa)
     
 
  0.523
POPTR_0009s07960.1
Uncharacterized protein; Belongs to the ubiquitin-activating E1 family (1084 aa)
       
 
  0.500
POPTR_0009s07950.1
Uncharacterized protein; Belongs to the ubiquitin-activating E1 family (1094 aa)
       
 
  0.500
POPTR_0001s28750.1
Ubiquitin activating enzyme 2 family protein; Belongs to the ubiquitin-activating E1 family (1087 aa)
       
 
  0.500
POPTR_0006s24910.1
Uncharacterized protein (774 aa)
       
 
  0.470
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
 
  0.456
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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