STRINGSTRING
POPTR_0001s35950.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s35950.1" - annotation not available in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s35950.1annotation not available (359 aa)    
Predicted Functional Partners:
POPTR_0001s25730.1
Cell division control protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBT1_POPTR]; Belongs to the CDC6/cdc18 family (494 aa)
   
 
  0.996
POPTR_0015s10230.1
Uncharacterized protein (592 aa)
     
 
  0.995
POPTR_0003s09350.1
Origin recognition complex second largest subunit 2 (363 aa)
     
 
  0.995
POPTR_0009s05910.1
Origin recognition complex 1 family protein (814 aa)
   
 
  0.995
POPTR_0009s13690.1
Uncharacterized protein (416 aa)
     
 
  0.995
POPTR_0010s10750.1
Zinc knuckle family protein (283 aa)
     
 
  0.994
POPTR_0016s08660.1
annotation not available (114 aa)
   
 
  0.993
POPTR_0539s00210.1
annotation not available (235 aa)
     
 
  0.992
POPTR_0019s08440.1
Uncharacterized protein (179 aa)
     
 
  0.992
POPTR_0019s08400.1
annotation not available (592 aa)
     
 
  0.992
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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