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POPTR_0001s36470.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s36470.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s36470.1Uncharacterized protein (236 aa)    
Predicted Functional Partners:
POPTR_0001s33860.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9GJT1_POPTR] (500 aa)
   
     
  0.675
POPTR_0012s13120.1
Annotation not available (137 aa)
   
     
  0.674
POPTR_0012s09880.1
Predicted protein (631 aa)
   
     
  0.674
POPTR_0005s06540.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9H499_POPTR] (517 aa)
   
     
  0.674
POPTR_0002s04340.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PID7_POPTR] (414 aa)
   
     
  0.674
POPTR_0011s10320.1
Cytochrome P450 (125 aa)
   
     
  0.673
POPTR_0012s13130.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9NI13_POPTR] (385 aa)
   
     
  0.672
POPTR_0011s10210.1
Cytochrome P450, mRNA [source-RefSeq DNA_predicted;Acc-XM_002331301.1] (134 aa)
   
     
  0.672
POPTR_0015s09850.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9IF18_POPTR] (419 aa)
   
     
  0.668
POPTR_0009s06930.1
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9HNL4_POPTR] (462 aa)
   
     
  0.658
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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