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POPTR_0001s37040.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s37040.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s37040.1Predicted protein (877 aa)    
Predicted Functional Partners:
POPTR_0009s06380.1
Predicted protein; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1482 aa)
     
 
  0.981
POPTR_0001s27120.1
Predicted protein; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1485 aa)
     
 
  0.981
POPTR_0016s03560.1
Predicted protein; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (722 aa)
     
 
  0.960
POPTR_0006s03770.1
Predicted protein; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (733 aa)
     
 
  0.960
POPTR_0010s25320.1
Predicted protein (948 aa)
     
 
  0.958
POPTR_0004s02170.1
Predicted protein (647 aa)
     
 
  0.939
POPTR_0009s12370.1
Predicted protein (974 aa)
     
      0.931
POPTR_0004s16680.1
Predicted protein (203 aa)
     
      0.928
POPTR_0014s12420.1
Predicted protein (322 aa)
     
      0.922
POPTR_0002s20630.1
Predicted protein (327 aa)
     
      0.922
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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