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POPTR_0001s37480.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s37480.1" - ZIP transporter in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s37480.1ZIP transporter (347 aa)    
Predicted Functional Partners:
POPTR_0016s14740.1
Uncharacterized protein (600 aa)
     
 
  0.725
POPTR_0006s11190.1
ZIP transporter (605 aa)
     
 
  0.725
POPTR_0003s20410.1
ZIP transporter (326 aa)
     
 
  0.725
POPTR_0001s05620.1
ZIP transporter (276 aa)
     
 
  0.725
POPTR_0010s11210.1
Predicted protein (90 aa)
       
 
  0.620
POPTR_0008s13930.1
ZIP transporter (398 aa)
       
 
  0.620
POPTR_0016s04430.1
Metal tolerance protein [source-UniProtKB/TrEMBL;Acc-B9IHY3_POPTR] (386 aa)
     
   
  0.512
POPTR_0005s11240.1
Metal tolerance protein [source-UniProtKB/TrEMBL;Acc-B9MXD1_POPTR] (586 aa)
     
   
  0.512
POPTR_0008s17800.1
Urease (837 aa)
           
  0.501
POPTR_0016s09210.1
EIN2-like protein, nramp transporter (1234 aa)
           
  0.469
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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