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POPTR_0001s37570.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s37570.1" - Pyridoxal-5'-phosphate-dependent enzyme family protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
POPTR_0001s37570.1Pyridoxal-5’-phosphate-dependent enzyme family protein (424 aa)    
Predicted Functional Partners:
POPTR_0003s12700.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002304457.1] (491 aa)
         
  0.895
POPTR_0001s09340.1
Uncharacterized protein (526 aa)
         
  0.895
POPTR_0017s12240.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PID6_POPTR] (548 aa)
   
  0.871
POPTR_0016s03770.1
annotation not available (464 aa)
   
  0.871
POPTR_0006s03970.1
annotation not available (246 aa)
   
  0.871
POPTR_0017s08610.1
Adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (485 aa)
   
 
  0.859
POPTR_0001s32780.1
Adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (485 aa)
   
 
  0.859
POPTR_0009s05730.3
Uncharacterized protein (690 aa)
   
 
  0.858
POPTR_0001s34270.1
Sulfite reductase family protein (691 aa)
   
 
  0.858
POPTR_0001s26420.1
annotation not available (676 aa)
   
 
  0.858
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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