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POPTR_0001s37680.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s37680.1" - Histone deacetylase [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s37680.1Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9GFM4_POPTR] (464 aa)    
Predicted Functional Partners:
POPTR_0015s07690.1
Predicted protein (528 aa)
     
      0.892
POPTR_0010s21910.1
Predicted protein (123 aa)
       
      0.852
POPTR_0008s04870.1
Predicted protein (123 aa)
       
      0.852
POPTR_0007s05390.1
Hypothetical protein (120 aa)
       
      0.852
POPTR_0007s05380.1
Annotation not available (54 aa)
       
      0.852
POPTR_0006s23070.1
Predicted protein (123 aa)
       
      0.852
POPTR_0006s23060.1
Predicted protein (123 aa)
       
      0.852
POPTR_0005s07630.1
Predicted protein (89 aa)
       
      0.852
POPTR_0006s11980.1
Predicted protein (614 aa)
       
      0.846
POPTR_0001s09190.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI64_POPTR] (334 aa)
       
      0.846
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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