Full Link:
STRINGSTRING
POPTR_0001s37960.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s37960.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s37960.1Predicted protein (519 aa)    
Predicted Functional Partners:
POPTR_0015s04670.1
Predicted protein (320 aa)
       
      0.769
POPTR_0009s16090.1
Predicted protein (404 aa)
       
      0.769
POPTR_0003s18870.1
Annotation not available (119 aa)
     
      0.598
POPTR_0001s07340.1
Predicted protein (865 aa)
     
      0.597
POPTR_0003s18880.1
Annotation not available (732 aa)
     
      0.595
POPTR_0003s18890.1
Predicted protein (180 aa)
       
      0.586
POPTR_0003s15660.1
Predicted protein (403 aa)
       
      0.534
POPTR_0001s12490.1
Predicted protein (107 aa)
       
      0.534
POPTR_0001s36670.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002298786.1] (627 aa)
     
      0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (4%) [HD]