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STRINGSTRING
POPTR_0001s38240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s38240.1" - Transcription elongation factor 1 homolog in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
POPTR_0001s38240.1Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions (70 aa)    
Predicted Functional Partners:
POPTR_0004s01680.1
Uncharacterized protein (137 aa)
     
        0.860
POPTR_0009s10050.1
DNA-directed RNA polymerase II 36 kDa polypeptide B family protein (323 aa)
     
 
  0.817
POPTR_0003s11350.1
annotation not available (389 aa)
     
   
  0.744
POPTR_0001s07820.1
Uncharacterized protein (397 aa)
     
   
  0.744
POPTR_0011s14790.1
annotation not available (62 aa)
     
      0.722
POPTR_0009s07520.2
DNA-directed RNA polymerase II 13.6 kDa polypeptide family protein (116 aa)
     
      0.694
POPTR_1437s00210.1
annotation not available (283 aa)
     
 
  0.654
POPTR_0005s10940.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
     
 
  0.654
NRPD903
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1920 aa)
     
 
  0.654
POPTR_0001s08650.1
Uncharacterized protein; Nuclear RNA polymerase D1A (1109 aa)
     
 
  0.654
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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