• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s38280.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s38280.1" - Zinc finger family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s38280.1Zinc finger family protein (551 aa)    
Predicted Functional Partners:
HDA906
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9H356_POPTR] (754 aa)
       
 
  0.679
POPTR_0010s20500.1
Uncharacterized protein (481 aa)
       
 
  0.648
POPTR_0019s03550.1
annotation not available (1267 aa)
     
 
  0.608
POPTR_0019s15330.1
STARIK 1 family protein; ABC transporter family of the mitochondria family (641 aa)
     
   
  0.598
POPTR_0013s15640.1
STARIK 1 family protein; ABC transporter family of the mitochondria family (762 aa)
     
   
  0.598
POPTR_0004s19920.1
Uncharacterized protein (518 aa)
           
  0.597
POPTR_0015s13950.1
Uncharacterized protein (736 aa)
           
  0.593
POPTR_0015s12480.1
Uncharacterized protein; Belongs to the peptidase A1 family (486 aa)
           
  0.593
POPTR_0014s17640.1
Uncharacterized protein (619 aa)
           
  0.593
POPTR_0012s13990.1
Uncharacterized protein (732 aa)
           
  0.593
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]