STRINGSTRING
POPTR_0001s38310.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s38310.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s38310.1Predicted protein (464 aa)    
Predicted Functional Partners:
POPTR_0002s05840.1
Predicted protein (444 aa)
 
 
  0.992
POPTR_0005s22680.1
Predicted protein (254 aa)
 
 
  0.991
POPTR_0004s24090.1
Predicted protein (225 aa)
 
 
  0.975
POPTR_0014s06520.1
Predicted protein (216 aa)
 
 
  0.972
POPTR_0006s01080.1
Predicted protein (419 aa)
 
   
  0.893
POPTR_0010s01450.1
Predicted protein (275 aa)
   
   
  0.648
POPTR_0483s00220.1
Predicted protein (213 aa)
   
 
  0.533
POPTR_0483s00200.1
Uncharacterized protein (146 aa)
   
 
  0.533
POPTR_0022s00410.1
Gamma class glutathione transferase EF1Bgamma3 (421 aa)
   
 
  0.533
POPTR_0019s10560.1
Gamma class glutathione transferase EF1Bgamma1 (426 aa)
   
 
  0.533
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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